No description
- C++ 97.6%
- CMake 2.4%
| Filename | Latest commit message | Latest commit date |
|---|---|---|
| alignment.cpp | ||
| alignment.h | ||
| CMakeLists.txt | ||
| corr.out | ||
| corrector.kdev4 | ||
| deletion.cpp | ||
| deletion.h | ||
| main.cpp | ||
| nucleotide.cpp | ||
| nucleotide.h | ||
| params.cpp | ||
| params.h | ||
| README.md | ||
The corrector will correct VAR genes in your assembly. Using a nucleotide FASTA file and a database of proteins, it will generate a corrected FASTA file. The database of proteins can be downloaded here (normalized data set) or here (full data set). Calculations with the full data set will take longer.
Command line options:
- -h help
- -i input nucleotide fasta file (MANDATORY)
- -o output corrected nucleotide fasta file
- -d database of proteins (MANDATOY)
- -t threads [8]
- -e edit list output file
- -f frames of all nucleotides output file
- -q quiet, do not show counter